PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_6A7EFC4661.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 290aa MW: 30212.5 Da PI: 5.9728

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_6A7EFC4661.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	44	105	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+sss Traes_6DL_6A7EFC4661.2 44 PEAAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSSS 105 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	43	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	47	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MQDFQSIPGL AGRLFGGAAA ADIRRVQGPA SRCGVFSQAA SAQPEAAVKC PRCESTNTKF 60 CYYNNYNLSQ PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSSSSASAP STPAATDAKS 120 QRRASSSSSS RSNSGSGSAS PTANGEDTPT TTTDPPPATP SSNSNANAVS FASRMTNYPF 180 AADVPPPAPI FADQAAALAS LFAPPPPPPL PVFSFSAEPK MEEAIGSLLL PGQEPAQEPE 240 EPTCTSTVAD MAPFMSLDAG IFELGDASPA DYWNGGSCWT DVQDPSVYLP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY955493	0.0	AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647826.1	1e-100	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	W5GWY2	0.0	W5GWY2_WHEAT; Uncharacterized protein
STRING	OB02G37970.1	1e-100	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	9e-33	DNA binding with one finger 2.4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]